The Ratio Calculator is an ImageJ plugin. Click here to go to the Bitbucket project page.
Additional documentation for the Ratio Calculator will be published here soon.

The Mitotracker is a Matlab application. It is still being optimized prior to release.

I have also created a PHP/SQL-based fly stock collection database. It is not good enough for public release yet, but if you are interested in it, just contact me.

Unrelated: scripts for downloading images from can be found here.